Program Listing for File monoculture_population.hpp

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#pragma once
#ifndef DISH2_LOAD_MONOCULTURE_POPULATION_HPP_INCLUDE
#define DISH2_LOAD_MONOCULTURE_POPULATION_HPP_INCLUDE

#include <algorithm>
#include <cstdlib>
#include <set>

#include "../../../third-party/conduit/include/uitsl/polyfill/filesystem.hpp"
#include "../../../third-party/conduit/include/uitsl/utility/keyname_directory_filter.hpp"
#include "../../../third-party/Empirical/include/emp/base/always_assert.hpp"
#include "../../../third-party/Empirical/include/emp/base/vector.hpp"
#include "../../../third-party/Empirical/include/emp/tools/keyname_utils.hpp"
#include "../../../third-party/Empirical/include/emp/tools/string_utils.hpp"

#include "../algorithm/seed_genomes_into.hpp"
#include "../debug/log_msg.hpp"
#include "../genome/Genome.hpp"
#include "../utility/autoload.hpp"
#include "../world/ThreadWorld.hpp"

namespace dish2 {

template< typename Spec >
void monoculture_population( dish2::ThreadWorld<Spec>& world ) {

  const auto monoculture_paths = uitsl::keyname_directory_filter({
    {"a", "genome"},
    {"ext", R"(\.bin|\.bin\.gz|\.bin\.xz|\.json|\.json\.gz|\.json\.xz)"}
  }, ".", true);

  emp_always_assert(
    monoculture_paths.size() == 1,
    monoculture_paths.size(), std::system( "ls *a=genome*" )
  );

  dish2::Genome<Spec> monoculture(
    dish2::autoload<dish2::Genome<Spec>>( monoculture_paths.front() )
  );

  dish2::log_msg( " loaded monoculture from ", monoculture_paths.front() );

  dish2::seed_genomes_into<Spec, true>( {monoculture}, world );

  dish2::log_msg( "applied monoculture" );

}

} // namespace dish2

#endif // #ifndef DISH2_LOAD_MONOCULTURE_POPULATION_HPP_INCLUDE